Package: ConsTree 1.0.1

ConsTree: Fast Algorithms for Phylogenetic Consensus Trees

Efficient construction of phylogenetic consensus trees. Methods include strict, majority-rule, majority-rule (+), loose (combinable component / semi-strict), greedy, Adams, frequency difference, R*, and local consensus.

Authors:Martin R. Smith [aut, cre, cph], Jesper Jansson [aut, cph], Zhaoxian Li [aut, cph], Ramesh Rajaby [aut, cph], Chuanqi Shen [aut, cph], Wing-Kin Sung [aut, cph], Yutong Yang [aut, cph]

ConsTree_1.0.1.tar.gz
ConsTree_1.0.1.zip(r-4.7-x86_64)ConsTree_1.0.1.zip(r-4.7-arm64)ConsTree_1.0.1.zip(r-4.6-x86_64)ConsTree_1.0.1.zip(r-4.6-arm64)ConsTree_1.0.1.zip(r-4.5-x86_64)
ConsTree_1.0.1.tgz(r-4.6-x86_64)ConsTree_1.0.1.tgz(r-4.6-arm64)ConsTree_1.0.1.tgz(r-4.5-x86_64)ConsTree_1.0.1.tgz(r-4.5-arm64)
ConsTree_1.0.1.tar.gz(r-4.7-arm64)ConsTree_1.0.1.tar.gz(r-4.7-x86_64)ConsTree_1.0.1.tar.gz(r-4.6-arm64)ConsTree_1.0.1.tar.gz(r-4.6-x86_64)
ConsTree_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ConsTree/json (API)

# Install 'ConsTree' in R:

install.packages('ConsTree', repos = c('https://ms609.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ms609/constree/issues

Pkgdown/docs site:https://constree.github.io

Uses libs:

c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

On CRAN:

cpp openmp

5.43 score 1 stars 34 scripts 549 downloads 19 exports 11 dependencies

Last updated from:e90f3e9f76. Checks:15 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	146
linux-devel-x86_64	OK	203
source / vignettes	OK	239
linux-release-arm64	OK	133
linux-release-x86_64	OK	171
macos-release-arm64	OK	180
macos-release-x86_64	OK	279
macos-oldrel-arm64	OK	168
macos-oldrel-x86_64	OK	516
windows-devel-arm64	OK	291
windows-devel-x86_64	OK	210
windows-release-arm64	OK	263
windows-release-x86_64	OK	204
windows-oldrel-x86_64	OK	193
wasm-release	OK	131

Exports:Adams Average BHV BHVDist BHVDistance BHVMean BHVVariance Frequency Greedy Local Loose Majority MajorityPlus MajorityRule MR Quartet RStar Strict Transfer

Dependencies:ape bit bit64 digest lattice nlme PlotTools rbibutils Rcpp Rdpack TreeTools

Summarizing tree samples with ConsTree

Split-selection methods | Rooted methods | Distance and branch-length summaries | Method selection | References

Rendered fromConsTree.Rmdusingknitr::rmarkdown

Last update: 2026-09-07
Started: 2026-06-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Adams consensus tree	Adams
Average consensus tree	Average
Geodesic (BHV) distance between trees	BHV BHVDist BHVDistance
Fréchet mean and variance in BHV treespace	BHVMean BHVVariance
Frequency-difference consensus tree	Frequency
Greedy (extended majority-rule) consensus tree	Greedy
Local consensus tree	Local
Loose consensus tree	Loose
Majority-rule consensus tree	Majority MajorityRule MR
Majority-rule (+) consensus tree	MajorityPlus
Consensus tree that minimizes quartet distance	Quartet
R* consensus tree	RStar
Strict consensus tree	Strict
Consensus tree minimizing transfer distance	Transfer