Package: ConsTree
Title: Fast Algorithms for Phylogenetic Consensus Trees
Version: 1.0.1
Authors@R: c(
  person("Martin R.", "Smith", role = c("aut", "cre", "cph"),
         email = "martin.smith@durham.ac.uk",
         comment = c(ORCID = "0000-0001-5660-1727")),
  person("Jesper", "Jansson", role = c("aut", "cph"),
         comment = c(ORCID = "0000-0001-6859-8932",
                     "Consensus algorithms (FACT, FACT2, FDCT)")),
  person("Zhaoxian", "Li", role = c("aut", "cph"),
         comment = "Consensus algorithms (FACT)"),
  person("Ramesh", "Rajaby", role = c("aut", "cph"),
         comment = c(ORCID = "0000-0001-9980-1913",
                     "Consensus algorithms (FACT2, FDCT)")),
  person("Chuanqi", "Shen", role = c("aut", "cph"),
         comment = "Consensus algorithms (FACT)"),
  person("Wing-Kin", "Sung", role = c("aut", "cph"),
         comment = c(ORCID = "0000-0001-7806-7086",
                     "Consensus algorithms (FACT, FACT2, FDCT)")),
  person("Yutong", "Yang", role = c("aut", "cph"),
         comment = c("Consensus algorithms (FDCT)"))
  )
License: GPL (>= 3)
Copyright: Incorporates C++ code from 'FACT' (GPL-3,
        doi:10.1145/2925985), 'FACT2' and 'FDCT', by kind permission of
        Jesper Jansson and colleagues.
Description: Efficient construction of phylogenetic consensus trees.
        Methods include strict, majority-rule, majority-rule (+), loose
        (combinable component / semi-strict), greedy, Adams, frequency
        difference, R*, and local consensus.
URL: https://constree.github.io/
BugReports: https://github.com/ms609/ConsTree/issues/
Depends: R (>= 4.1.0),
Imports: ape (>= 5.6), Rcpp (>= 1.0.0), Rdpack (>= 2.6), TreeTools (>=
        2.4.1),
LinkingTo: Rcpp, TreeTools (>= 2.1.0),
SystemRequirements: C++17
Suggests: knitr, Quartet, rmarkdown, spelling, testthat (>= 3.0),
        TreeSearch (>= 2.0.0),
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/testthat/parallel: false
Config/roxygen2/version: 8.1.0
Config/Needs/memcheck: pkgdown, testthat
RdMacros: Rdpack
Encoding: UTF-8
Language: en-GB
Roxygen: list(markdown = TRUE)
Repository: https://ms609.r-universe.dev
Date/Publication: 2026-10-16 13:54:35 UTC
RemoteUrl: https://github.com/ms609/constree
RemoteRef: HEAD
RemoteSha: e90f3e9f7655aec81b48f6625f073cc05302a0b6
NeedsCompilation: yes
Packaged: 2026-10-16 18:05:25 UTC; root
Author: Martin R. Smith [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-5660-1727>),
  Jesper Jansson [aut, cph] (ORCID:
    <https://orcid.org/0000-0001-6859-8932>, Consensus algorithms
    (FACT, FACT2, FDCT)),
  Zhaoxian Li [aut, cph] (Consensus algorithms (FACT)),
  Ramesh Rajaby [aut, cph] (ORCID:
    <https://orcid.org/0000-0001-9980-1913>, Consensus algorithms
    (FACT2, FDCT)),
  Chuanqi Shen [aut, cph] (Consensus algorithms (FACT)),
  Wing-Kin Sung [aut, cph] (ORCID:
    <https://orcid.org/0000-0001-7806-7086>, Consensus algorithms
    (FACT, FACT2, FDCT)),
  Yutong Yang [aut, cph] (Consensus algorithms (FDCT))
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>