Create Ternary Plots in RUpdated 1 months ago

Martin R. Smith

Rendered from Ternary.Rmd in Ternary 2.3.3.
Calculate tree similarity with 'TreeDist'Updated 1 months ago

Martin R. Smith

Rendered from Using-TreeDist.Rmd in TreeDist 2.9.1.
Contextualizing tree distancesUpdated 1 months ago

Martin R. Smith

Rendered from using-distances.Rmd in TreeDist 2.9.1.
Holdridge plotsUpdated 2 months ago

Martin R. Smith

Rendered from Holdridge.Rmd in Ternary 2.3.3.
Interpolating and contouringUpdated 2 months ago

Martin R. Smith

Rendered from interpolation.Rmd in Ternary 2.3.3.
Introduction for new R usersUpdated 2 months ago

Martin R. Smith

Rendered from new-users.Rmd in Ternary 2.3.3.
Tree space analysisUpdated 3 months ago

Martin R. Smith

Rendered from treespace.Rmd in TreeDist 2.9.1.
Extending the Robinson-Foulds metricUpdated 3 months ago

Martin R. Smith

Rendered from Robinson-Foulds.Rmd in TreeDist 2.9.1.
Generalized Robinson-Foulds distancesUpdated 6 months ago

Martin R. Smith

Rendered from Generalized-RF.Rmd in TreeDist 2.9.1.
Analysing Congreve & Lamsdell matricesUpdated 7 months ago

Martin R. Smith [email protected]

Rendered from Conduct-analyses.Rmd in CongreveLamsdell2016 1.0.3.
Resolution and accuracy in Congreve & Lamsdell matricesUpdated 8 months ago

Martin R. Smith [email protected]

Rendered from Compare-methods.Rmd in CongreveLamsdell2016 1.0.3.
Adding annotationsUpdated 9 months ago

Martin R. Smith

Rendered from annotation.Rmd in Ternary 2.3.3.
Detecting rogue taxa in Bayesian posterior tree setsUpdated 10 months ago

Martin R. Smith, Durham University

Rendered from Bayesian.Rmd in Rogue 2.1.6.
Tree search with Profile parsimonyUpdated 1 years ago

Martin R. Smith

Rendered from profile.Rmd in TreeSearch 1.5.1.
Getting started: Exploring tree spaceUpdated 1 years ago

Martin R. Smith

Rendered from tree-space.Rmd in TreeSearch 1.5.1.
Getting started: Installing R and TreeSearchUpdated 1 years ago

Martin R. Smith

Rendered from getting-started.Rmd in TreeSearch 1.5.1.
Getting started: Simple tree searchesUpdated 1 years ago

Martin R. Smith

Rendered from tree-search.Rmd in TreeSearch 1.5.1.
Profile parsimonyUpdated 1 years ago

Martin R. Smith

Rendered from profile-scores.Rmd in TreeSearch 1.5.1.
Tree search with custom optimality criteriaUpdated 1 years ago

Martin R. Smith

Rendered from custom.Rmd in TreeSearch 1.5.1.
Loading phylogenetic data into RUpdated 1 years ago

Martin R. Smith [email protected]

Rendered from load-data.Rmd in TreeTools 1.12.0.9000.
Loading phylogenetic trees into RUpdated 1 years ago

Martin R. Smith [email protected]

Rendered from load-trees.Rmd in TreeTools 1.12.0.9000.
Analysing landscapes of phylogenetic treesUpdated 1 years ago

Martin R. Smith

Rendered from landscapes.Rmd in TreeDist 2.9.1.
Trees with different leavesUpdated 2 years ago

Martin R. Smith

Rendered from different-leaves.Rmd in TreeDist 2.9.1.
Comparing splits using information theoryUpdated 2 years ago

Martin R. Smith

Rendered from information.Rmd in TreeDist 2.9.1.
About the quartet distanceUpdated 2 years ago

Martin R. Smith

Rendered from Quartet-Distance.Rmd in Quartet 1.2.6.9001.
Getting started with QuartetUpdated 2 years ago

Martin R. Smith

Rendered from Using-Quartet.Rmd in Quartet 1.2.6.9001.
Comparing sets of trees from different analysesUpdated 2 years ago

Martin R. Smith

Rendered from compare-treesets.Rmd in TreeDist 2.9.1.
File system navigation in RUpdated 3 years ago

Martin R. Smith [email protected]

Rendered from filesystem-navigation.Rmd in TreeTools 1.12.0.9000.
Using TBRDistUpdated 4 years ago

Martin R. Smith

Rendered from TBRDist.Rmd in TBRDist 1.0.2.
Node support efficacy in Congreve & Lamsdell matricesUpdated 5 years ago

Martin R. Smith [email protected]

Rendered from Compare-node-supports.Rmd in CongreveLamsdell2016 1.0.3.