Getting started with QuartetUpdated 6 days ago

Martin R. Smith

Rendered from Using-Quartet.Rmd in Quartet 1.2.7.
File system navigation in RUpdated 12 days ago

Martin R. Smith [email protected]

Rendered from filesystem-navigation.Rmd in TreeTools 1.13.0.9000.
About the quartet distanceUpdated 3 months ago

Martin R. Smith

Rendered from Quartet-Distance.Rmd in Quartet 1.2.7.
Create Ternary Plots in RUpdated 3 months ago

Martin R. Smith

Rendered from Ternary.Rmd in Ternary 2.3.3.9000.
Calculate tree similarity with 'TreeDist'Updated 5 months ago

Martin R. Smith

Rendered from Using-TreeDist.Rmd in TreeDist 2.9.2.
Contextualizing tree distancesUpdated 5 months ago

Martin R. Smith

Rendered from using-distances.Rmd in TreeDist 2.9.2.
Holdridge plotsUpdated 6 months ago

Martin R. Smith

Rendered from Holdridge.Rmd in Ternary 2.3.3.9000.
Interpolating and contouringUpdated 6 months ago

Martin R. Smith

Rendered from interpolation.Rmd in Ternary 2.3.3.9000.
Introduction for new R usersUpdated 6 months ago

Martin R. Smith

Rendered from new-users.Rmd in Ternary 2.3.3.9000.
Tree space analysisUpdated 7 months ago

Martin R. Smith

Rendered from treespace.Rmd in TreeDist 2.9.2.
Extending the Robinson-Foulds metricUpdated 7 months ago

Martin R. Smith

Rendered from Robinson-Foulds.Rmd in TreeDist 2.9.2.
Generalized Robinson-Foulds distancesUpdated 9 months ago

Martin R. Smith

Rendered from Generalized-RF.Rmd in TreeDist 2.9.2.
Analysing Congreve & Lamsdell matricesUpdated 11 months ago

Martin R. Smith [email protected]

Rendered from Conduct-analyses.Rmd in CongreveLamsdell2016 1.0.3.
Resolution and accuracy in Congreve & Lamsdell matricesUpdated 11 months ago

Martin R. Smith [email protected]

Rendered from Compare-methods.Rmd in CongreveLamsdell2016 1.0.3.
Adding annotationsUpdated 1 years ago

Martin R. Smith

Rendered from annotation.Rmd in Ternary 2.3.3.9000.
Detecting rogue taxa in Bayesian posterior tree setsUpdated 1 years ago

Martin R. Smith, Durham University

Rendered from Bayesian.Rmd in Rogue 2.1.6.
Tree search with Profile parsimonyUpdated 1 years ago

Martin R. Smith

Rendered from profile.Rmd in TreeSearch 1.5.1.9002.
Getting started: Exploring tree spaceUpdated 2 years ago

Martin R. Smith

Rendered from tree-space.Rmd in TreeSearch 1.5.1.9002.
Getting started: Installing R and TreeSearchUpdated 2 years ago

Martin R. Smith

Rendered from getting-started.Rmd in TreeSearch 1.5.1.9002.
Getting started: Simple tree searchesUpdated 2 years ago

Martin R. Smith

Rendered from tree-search.Rmd in TreeSearch 1.5.1.9002.
Profile parsimonyUpdated 2 years ago

Martin R. Smith

Rendered from profile-scores.Rmd in TreeSearch 1.5.1.9002.
Tree search with custom optimality criteriaUpdated 2 years ago

Martin R. Smith

Rendered from custom.Rmd in TreeSearch 1.5.1.9002.
Loading phylogenetic data into RUpdated 2 years ago

Martin R. Smith [email protected]

Rendered from load-data.Rmd in TreeTools 1.13.0.9000.
Loading phylogenetic trees into RUpdated 2 years ago

Martin R. Smith [email protected]

Rendered from load-trees.Rmd in TreeTools 1.13.0.9000.
Analysing landscapes of phylogenetic treesUpdated 2 years ago

Martin R. Smith

Rendered from landscapes.Rmd in TreeDist 2.9.2.
Trees with different leavesUpdated 2 years ago

Martin R. Smith

Rendered from different-leaves.Rmd in TreeDist 2.9.2.
Comparing splits using information theoryUpdated 2 years ago

Martin R. Smith

Rendered from information.Rmd in TreeDist 2.9.2.
Comparing sets of trees from different analysesUpdated 3 years ago

Martin R. Smith

Rendered from compare-treesets.Rmd in TreeDist 2.9.2.
Using TBRDistUpdated 4 years ago

Martin R. Smith

Rendered from TBRDist.Rmd in TBRDist 1.0.2.
Node support efficacy in Congreve & Lamsdell matricesUpdated 5 years ago

Martin R. Smith [email protected]

Rendered from Compare-node-supports.Rmd in CongreveLamsdell2016 1.0.3.