1. CongreveLamsdell2016::clBootFreqPartitions
    Congreve and Lamsdell tree distances
  2. CongreveLamsdell2016::clBootFreqQuartets
    Congreve and Lamsdell tree distances
  3. CongreveLamsdell2016::clBootGcPartitions
    Congreve and Lamsdell tree distances
  4. CongreveLamsdell2016::clBootGcQuartets
    Congreve and Lamsdell tree distances
  5. CongreveLamsdell2016::clBremPartitions
    Congreve and Lamsdell tree distances
  6. CongreveLamsdell2016::clBremQuartets
    Congreve and Lamsdell tree distances
  7. CongreveLamsdell2016::clCI
    Consistency indices
  8. CongreveLamsdell2016::clColours
    Default colours for analyses.
  9. CongreveLamsdell2016::clJackFreqPartitions
    Congreve and Lamsdell tree distances
  10. CongreveLamsdell2016::clJackFreqQuartets
    Congreve and Lamsdell tree distances
  11. CongreveLamsdell2016::clJackGcPartitions
    Congreve and Lamsdell tree distances
  12. CongreveLamsdell2016::clJackGcQuartets
    Congreve and Lamsdell tree distances
  13. CongreveLamsdell2016::clMatrices
    100 simulated data matrices
  14. CongreveLamsdell2016::clMkvPartitions
    Congreve and Lamsdell tree distances
  15. CongreveLamsdell2016::clMkvQuartets
    Congreve and Lamsdell tree distances
  16. CongreveLamsdell2016::clPhyDat
    100 simulated data matrices
  17. CongreveLamsdell2016::clReferenceTree
    Tree topology for matrix simulation
  18. Quartet::sq_trees
    Eighteen example trees
    multiPhylo
  19. Ternary::cbPalette13
    Palettes compatible with colour blindness
  20. Ternary::cbPalette15
    Palettes compatible with colour blindness
  21. Ternary::cbPalette8
    Palettes compatible with colour blindness
  22. Ternary::holdridge
    Random sample of points for Holdridge plotting
  23. Ternary::holdridgeClasses
    Names of the 38 classes defined with the Holdridge system
  24. Ternary::holdridgeClassesUp
    Names of the 38 classes defined with the Holdridge system
  25. Ternary::holdridgeLifeZones
    Names of the 38 classes defined with the Holdridge system
  26. Ternary::holdridgeLifeZonesUp
    Names of the 38 classes defined with the Holdridge system
  27. TreeSearch::congreveLamsdellMatrices
    100 simulated data matrices
  28. TreeSearch::inapplicable.citations
    Thirty datasets with inapplicable data
  29. TreeSearch::inapplicable.datasets
    Thirty datasets with inapplicable data
  30. TreeSearch::inapplicable.phyData
    Thirty datasets with inapplicable data
  31. TreeSearch::inapplicable.trees
    Thirty datasets with inapplicable data
  32. TreeSearch::profiles
    Empirically counted profiles for small trees
  33. TreeSearch::referenceTree
    Tree topology for matrix simulation
  34. TreeTools::Lobo.data
    Data from Zhang et al. 2016
  35. TreeTools::Lobo.phy
    Data from Zhang et al. 2016
  36. TreeTools::brewer
    Brewer palettes
  37. TreeTools::nRootedShapes
    Number of rooted / unrooted tree shapes
  38. TreeTools::nUnrootedShapes
    Number of rooted / unrooted tree shapes
  39. TreeTools::unrootedKeys
    Integer representing shape of a tree