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  1. CongreveLamsdell2016::clBootFreqPartitions
    Congreve and Lamsdell tree distances
  2. CongreveLamsdell2016::clBootFreqQuartets
    Congreve and Lamsdell tree distances
  3. CongreveLamsdell2016::clBootGcPartitions
    Congreve and Lamsdell tree distances
  4. CongreveLamsdell2016::clBootGcQuartets
    Congreve and Lamsdell tree distances
  5. CongreveLamsdell2016::clBremPartitions
    Congreve and Lamsdell tree distances
  6. CongreveLamsdell2016::clBremQuartets
    Congreve and Lamsdell tree distances
  7. CongreveLamsdell2016::clCI
    Consistency indices
  8. CongreveLamsdell2016::clColours
    Default colours for analyses.
  9. CongreveLamsdell2016::clJackFreqPartitions
    Congreve and Lamsdell tree distances
  10. CongreveLamsdell2016::clJackFreqQuartets
    Congreve and Lamsdell tree distances
  11. CongreveLamsdell2016::clJackGcPartitions
    Congreve and Lamsdell tree distances
  12. CongreveLamsdell2016::clJackGcQuartets
    Congreve and Lamsdell tree distances
  13. CongreveLamsdell2016::clMatrices
    100 simulated data matrices
  14. CongreveLamsdell2016::clMkvPartitions
    Congreve and Lamsdell tree distances
  15. CongreveLamsdell2016::clMkvQuartets
    Congreve and Lamsdell tree distances
  16. CongreveLamsdell2016::clPhyDat
    100 simulated data matrices
  17. CongreveLamsdell2016::clReferenceTree
    Tree topology for matrix simulation
  18. motmot::allopatric.data
    Finch allopatric data
  19. motmot::anolis.data
    Anolis phenotype data
  20. motmot::anolis.tree
    Anolis phylogeny
  21. motmot::finch.data
    Finch phenotype data
  22. motmot::finch.tree
    Finch tree
  23. motmot::sympatric.data
    Pairwise sympatry matrix for finch species
    matrix|13 x 13
  24. PlotTools::altPalette12
    Palettes compatible with colour blindness
  25. PlotTools::altPalette15
    Palettes compatible with colour blindness
  26. PlotTools::altPalette24
    Palettes compatible with colour blindness
  27. PlotTools::altPalette8
    Palettes compatible with colour blindness
  28. PlotTools::cbPalette12
    Palettes compatible with colour blindness
  29. PlotTools::cbPalette15
    Palettes compatible with colour blindness
  30. PlotTools::cbPalette24
    Palettes compatible with colour blindness
  31. PlotTools::cbPalette8
    Palettes compatible with colour blindness
  32. Quartet::sq_trees
    Eighteen example trees
    multiPhylo
  33. Ternary::cbPalette13
    Palettes compatible with colour blindness
  34. Ternary::cbPalette15
    Palettes compatible with colour blindness
  35. Ternary::cbPalette8
    Palettes compatible with colour blindness
  36. Ternary::holdridge
    Random sample of points for Holdridge plotting
  37. Ternary::holdridgeClasses
    Names of the 38 classes defined with the Holdridge system
  38. Ternary::holdridgeClassesUp
    Names of the 38 classes defined with the Holdridge system
  39. Ternary::holdridgeLifeZones
    Names of the 38 classes defined with the Holdridge system
  40. Ternary::holdridgeLifeZonesUp
    Names of the 38 classes defined with the Holdridge system
  41. TreeSearch::congreveLamsdellMatrices
    100 simulated data matrices
  42. TreeSearch::inapplicable.citations
    Thirty datasets with inapplicable data
  43. TreeSearch::inapplicable.datasets
    Thirty datasets with inapplicable data
  44. TreeSearch::inapplicable.phyData
    Thirty datasets with inapplicable data
  45. TreeSearch::inapplicable.trees
    Thirty datasets with inapplicable data
  46. TreeSearch::profiles
    Empirically counted profiles for small trees
  47. TreeSearch::referenceTree
    Tree topology for matrix simulation
  48. TreeTools::brewer
    Brewer palettes
  49. TreeTools::Lobo.data
    Data from Zhang et al. 2016
  50. TreeTools::Lobo.phy
    Data from Zhang et al. 2016
  51. TreeTools::nRootedShapes
    Number of rooted / unrooted tree shapes
  52. TreeTools::nUnrootedShapes
    Number of rooted / unrooted tree shapes
  53. TreeTools::unrootedKeys
    Integer representing shape of a tree