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  1. CongreveLamsdell2016::clBootFreqPartitions
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  2. CongreveLamsdell2016::clBootFreqQuartets
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  3. CongreveLamsdell2016::clBootGcPartitions
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  4. CongreveLamsdell2016::clBootGcQuartets
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  5. CongreveLamsdell2016::clBremPartitions
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  6. CongreveLamsdell2016::clBremQuartets
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  7. CongreveLamsdell2016::clCI
    Consistency indices
    json| rda| rds
    numeric
  8. CongreveLamsdell2016::clColours
    Default colours for analyses.
    json| rda| rds
    character
  9. CongreveLamsdell2016::clJackFreqPartitions
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  10. CongreveLamsdell2016::clJackFreqQuartets
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  11. CongreveLamsdell2016::clJackGcPartitions
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  12. CongreveLamsdell2016::clJackGcQuartets
    Congreve and Lamsdell tree distances
    csv| json| rda| rds
    list
  13. CongreveLamsdell2016::clMatrices
    100 simulated data matrices
    csv| json| rda| rds
    list
  14. CongreveLamsdell2016::clMkvPartitions
    Congreve and Lamsdell tree distances
    json| rda| rds
    array
  15. CongreveLamsdell2016::clMkvQuartets
    Congreve and Lamsdell tree distances
    json| rda| rds
    array
  16. CongreveLamsdell2016::clPhyDat
    100 simulated data matrices
    csv| rda| rds
    list
  17. CongreveLamsdell2016::clReferenceTree
    Tree topology for matrix simulation
    rda| rds
    phylo
  18. ips::ips.16S
    Bark Beetle 16S Sequences
    rda| rds
    DNAbin|42 x
  19. ips::ips.28S
    Bark Beetle 28S Sequences
    rda| rds
    DNAbin|28 x
  20. ips::ips.cox1
    Bark Beetle COX1 Sequences
    rda| rds
    DNAbin|26 x
  21. ips::ips.tree
    Ips Phylogeny
    rda| rds
    phylo
  22. ips::log_list
    Internal IPS Functions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|65 x 4
  23. ips::operator_list
    Internal IPS Functions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|149 x 4
  24. motmot::allopatric.data
    Finch allopatric data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13 x 13
  25. motmot::anolis.data
    Anolis phenotype data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|165 x 6
  26. motmot::anolis.tree
    Anolis phylogeny
    rda| rds
    phylo
  27. motmot::finch.data
    Finch phenotype data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13 x 5
  28. motmot::finch.tree
    Finch tree
    rda| rds
    phylo
  29. motmot::sympatric.data
    Pairwise sympatry matrix for finch species
    csv| json| rda| rds
    matrix|13 x 13
  30. PlotTools::altPalette12
    Palettes compatible with colour blindness
    json| rda| rds
    character
  31. PlotTools::altPalette15
    Palettes compatible with colour blindness
    json| rda| rds
    character
  32. PlotTools::altPalette24
    Palettes compatible with colour blindness
    json| rda| rds
    character
  33. PlotTools::altPalette8
    Palettes compatible with colour blindness
    json| rda| rds
    character
  34. PlotTools::cbPalette12
    Palettes compatible with colour blindness
    json| rda| rds
    character
  35. PlotTools::cbPalette15
    Palettes compatible with colour blindness
    json| rda| rds
    character
  36. PlotTools::cbPalette24
    Palettes compatible with colour blindness
    json| rda| rds
    character
  37. PlotTools::cbPalette8
    Palettes compatible with colour blindness
    json| rda| rds
    character
  38. Quartet::sq_trees
    Eighteen example trees
    csv| rda| rds
    multiPhylo
  39. Ternary::cbPalette13
    Palettes compatible with colour blindness
    json| rda| rds
    character
  40. Ternary::cbPalette15
    Palettes compatible with colour blindness
    json| rda| rds
    character
  41. Ternary::cbPalette8
    Palettes compatible with colour blindness
    json| rda| rds
    character
  42. Ternary::holdridge
    Random sample of points for Holdridge plotting
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39 x 4
  43. Ternary::holdridgeClasses
    Names of the 38 classes defined with the Holdridge system
    json| rda| rds
    character
  44. Ternary::holdridgeClassesUp
    Names of the 38 classes defined with the Holdridge system
    json| rda| rds
    character
  45. Ternary::holdridgeLifeZones
    Names of the 38 classes defined with the Holdridge system
    json| rda| rds
    character
  46. Ternary::holdridgeLifeZonesUp
    Names of the 38 classes defined with the Holdridge system
    json| rda| rds
    character
  47. TreeSearch::congreveLamsdellMatrices
    100 simulated data matrices
    csv| rda| rds
    list
  48. TreeSearch::inapplicable.citations
    Thirty datasets with inapplicable data
    json| rda| rds
    character
  49. TreeSearch::inapplicable.datasets
    Thirty datasets with inapplicable data
    json| rda| rds
    list
  50. TreeSearch::inapplicable.phyData
    Thirty datasets with inapplicable data
    rda| rds
    list
  51. TreeSearch::inapplicable.trees
    Thirty datasets with inapplicable data
    rda| rds
    list
  52. TreeSearch::profiles
    Empirically counted profiles for small trees
    json| rda| rds
    list
  53. TreeSearch::referenceTree
    Tree topology for matrix simulation
    rda| rds
    phylo
  54. TreeTools::brewer
    Brewer palettes
    json| rda| rds
    list
  55. TreeTools::Lobo.data
    Data from Zhang et al. 2016
    csv| json| rda| rds
    list
  56. TreeTools::Lobo.phy
    Data from Zhang et al. 2016
    csv| rda| rds
    phyDat
  57. TreeTools::nRootedShapes
    Number of rooted / unrooted tree shapes
    json| rda| rds
    integer64
  58. TreeTools::nUnrootedShapes
    Number of rooted / unrooted tree shapes
    json| rda| rds
    integer64
  59. TreeTools::unrootedKeys
    Integer representing shape of a tree
    json| rda| rds
    list