Package: TBRDist 1.0.2

TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees

Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <arxiv:1511.07529>.

Authors:Martin R. Smith [aut, cre, cph], Chris Whidden [cph]

TBRDist_1.0.2.tar.gz
TBRDist_1.0.2.zip(r-4.5)TBRDist_1.0.2.zip(r-4.4)TBRDist_1.0.2.zip(r-4.3)
TBRDist_1.0.2.tgz(r-4.5-x86_64)TBRDist_1.0.2.tgz(r-4.5-arm64)TBRDist_1.0.2.tgz(r-4.4-x86_64)TBRDist_1.0.2.tgz(r-4.4-arm64)TBRDist_1.0.2.tgz(r-4.3-x86_64)TBRDist_1.0.2.tgz(r-4.3-arm64)
TBRDist_1.0.2.tar.gz(r-4.5-noble)TBRDist_1.0.2.tar.gz(r-4.4-noble)
TBRDist_1.0.2.tgz(r-4.4-emscripten)TBRDist_1.0.2.tgz(r-4.3-emscripten)
TBRDist.pdf |TBRDist.html✨
TBRDist/json (API)
NEWS

# Install 'TBRDist' in R:

install.packages('TBRDist', repos = c('https://ms609.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ms609/tbrdist/issues

Pkgdown site:https://ms609.github.io

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

phylogenetics tree-distance distance-calculation phylogenetic-trees cpp

3.70 score 190 downloads 7 exports 50 dependencies

Last updated 4 years agofrom:9765597e84. Checks:1 OK, 11 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 06 2025
R-4.5-win-x86_64	NOTE	Mar 06 2025
R-4.5-mac-x86_64	NOTE	Mar 06 2025
R-4.5-mac-aarch64	NOTE	Mar 06 2025
R-4.5-linux-x86_64	NOTE	Mar 06 2025
R-4.4-win-x86_64	NOTE	Mar 06 2025
R-4.4-mac-x86_64	NOTE	Mar 06 2025
R-4.4-mac-aarch64	NOTE	Mar 06 2025
R-4.4-linux-x86_64	NOTE	Mar 06 2025
R-4.3-win-x86_64	NOTE	Mar 06 2025
R-4.3-mac-x86_64	NOTE	Mar 06 2025
R-4.3-mac-aarch64	NOTE	Mar 06 2025