Package: TBRDist 2.0.0

TBRDist: Rearrangement Distances Between Phylogenetic Trees

Fast calculation of tree rearrangement distances. For unrooted trees: Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR), and Replug distances, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>. For rooted trees: rooted SPR (rSPR) distance, using the fixed-parameter algorithms of Whidden, Beiko, and Zeh (2013) <doi:10.1137/110845045>.

Authors:Martin R. Smith [aut, cre, cph], Chris Whidden [cph]

TBRDist_2.0.0.tar.gz
TBRDist_2.0.0.zip(r-4.7)TBRDist_2.0.0.zip(r-4.6)TBRDist_2.0.0.zip(r-4.5)
TBRDist_2.0.0.tgz(r-4.6-x86_64)TBRDist_2.0.0.tgz(r-4.6-arm64)TBRDist_2.0.0.tgz(r-4.5-x86_64)TBRDist_2.0.0.tgz(r-4.5-arm64)
TBRDist_2.0.0.tar.gz(r-4.7-arm64)TBRDist_2.0.0.tar.gz(r-4.7-x86_64)TBRDist_2.0.0.tar.gz(r-4.6-arm64)TBRDist_2.0.0.tar.gz(r-4.6-x86_64)
TBRDist_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
TBRDist/json (API)
NEWS

# Install 'TBRDist' in R:
install.packages('TBRDist', repos = c('https://ms609.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ms609/tbrdist/issues

Pkgdown/docs site:https://ms609.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

phylogeneticstree-distancealgorithmsbioinformaticsdistance-calculationphylogenetic-treescpp

4.60 score 1 stars 4 scripts 614 downloads 8 exports 44 dependencies

Last updated from:e609ef2d32. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK169
linux-devel-x86_64OK178
source / vignettesOK286
linux-release-arm64OK201
linux-release-x86_64OK166
macos-release-arm64OK138
macos-release-x86_64OK226
macos-oldrel-arm64OK111
macos-oldrel-x86_64OK214
windows-develOK153
windows-releaseOK148
windows-oldrelOK150
wasm-releaseOK156

Exports:.CatchBadPair.DistReturn.PrepareTreesMAFInfoReplugDistRSPRDistTBRDistUSPRDist

Dependencies:apebase64encBHbitbit64bslibcachemclicolorspacecommonmarkdigestfastmapfastmatchfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlatticelifecyclemagrittrmemoisemimenlmeotelPlotToolspromisesR6rappdirsrbibutilsRcppRdpackrlangsassshinyshinyjssourcetoolsTreeDistTreeToolswithrxtable

Using TBRDist

Martin R. Smith

Rendered fromTBRDist.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2020-09-17
Started: 2019-11-20