{
  "_id": "6ad26cc13c1b78c68c07b547",
  "Package": "TotalCopheneticIndex",
  "Version": "2.0.1",
  "Title": "Quantify the Balance of Phylogenetic Trees",
  "Authors@R": "c(person(\"Martin R.\", 'Smith',\nemail=\"martin.smith@durham.ac.uk\",\nrole=c(\"aut\", \"cre\", \"cph\"),\ncomment=c(ORCID = \"0000-0001-5660-1727\"))\n)",
  "Maintainer": "Martin R. Smith <martin.smith@durham.ac.uk>",
  "Description": "Measures the degree of balance for a given phylogenetic\ntree by calculating the Total Cophenetic Index. Reference: A.\nMir, F. Rossello, L. A. Rotger (2013). A new balance index for\nphylogenetic trees. Math. Biosci. 241, 125-136\n<doi:10.1016/j.mbs.2012.10.005>.",
  "URL": "https://github.com/ms609/tci/",
  "BugReports": "https://github.com/ms609/TreeTools/issues/",
  "License": "Unlimited",
  "Language": "en-GB",
  "Encoding": "UTF-8",
  "ByteCompile": "true",
  "RoxygenNote": "7.1.1",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-16 18:04:27 UTC",
    "User": "root"
  },
  "Author": "Martin R. Smith [aut, cre, cph]\n(<https://orcid.org/0000-0001-5660-1727>)",
  "Repository": "https://ms609.r-universe.dev",
  "Date/Publication": "2021-06-23 12:20:01 UTC",
  "RemoteUrl": "https://github.com/cran/TotalCopheneticIndex",
  "RemoteRef": "HEAD",
  "RemoteSha": "68c2204bebece633add09823bb311b18f76e696f",
  "_user": "ms609",
  "_type": "src",
  "_file": "TotalCopheneticIndex_2.0.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/0e36590bd36966c98ca7dc49ec70d3e52860c1b0452dbd8094281f8d10047722",
  "_filesize": 91839,
  "_sha256": "0e36590bd36966c98ca7dc49ec70d3e52860c1b0452dbd8094281f8d10047722",
  "_expires": "2027-01-24T18:28:12.000Z",
  "_created": "2026-10-16T18:04:27.000Z",
  "_published": "2026-10-16T18:28:16.954Z",
  "_buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 117120301465,
      "time": 101,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12065526561"
    },
    {
      "job": 117120301257,
      "time": 100,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12065170872"
    },
    {
      "job": 117120301208,
      "time": 122,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12067570687"
    },
    {
      "job": 117120301201,
      "time": 92,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12066267997"
    },
    {
      "job": 117119298289,
      "time": 139,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12065010693"
    },
    {
      "job": 117120301172,
      "time": 80,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12064931398"
    },
    {
      "job": 117120301190,
      "time": 86,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "12064237689"
    },
    {
      "job": 117120301591,
      "time": 77,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "12065565229"
    },
    {
      "job": 117120301354,
      "time": 77,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12065530155"
    }
  ],
  "_upstream": "https://github.com/cran/TotalCopheneticIndex",
  "_commit": {
    "id": "68c2204bebece633add09823bb311b18f76e696f",
    "author": "Martin R. Smith <martin.smith@durham.ac.uk>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 2.0.1\n",
    "time": 1624450801
  },
  "_maintainer": {
    "name": "Martin R. Smith",
    "email": "martin.smith@durham.ac.uk",
    "login": "ms609",
    "bluesky": "@palaeosmith.bsky.social",
    "orcid": "0000-0001-5660-1727",
    "description": "Professor in palaeontology, interested in phylogenetic methods ",
    "uuid": 1695515
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.4.0",
      "role": "Depends"
    },
    {
      "package": "TreeTools",
      "version": ">= 1.4.5",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "ms609",
      "count": 3,
      "uuid": 1695515
    }
  ],
  "_userbio": {
    "uuid": 1695515,
    "type": "user",
    "name": "Martin R. Smith",
    "followers": 63,
    "description": "Professor in palaeontology, interested in phylogenetic methods "
  },
  "_downloads": {
    "count": 268,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/TotalCopheneticIndex"
  },
  "_devurl": "https://github.com/ms609/treetools",
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TotalCopheneticIndex.html"
  ],
  "_realowner": "ms609",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1",
      "date": "2016-03-26"
    },
    {
      "version": "1.0.0",
      "date": "2017-11-30"
    },
    {
      "version": "1.0.1",
      "date": "2019-01-29"
    },
    {
      "version": "2.0.0",
      "date": "2021-01-28"
    },
    {
      "version": "2.0.1",
      "date": "2021-06-23"
    }
  ],
  "_exports": [
    "list.ancestors",
    "tci",
    "tci.context",
    "tci.context.n"
  ],
  "_help": [
    {
      "page": "list.ancestors",
      "title": "List ancestors",
      "topics": [
        "list.ancestors"
      ]
    },
    {
      "page": "tci",
      "title": "Total Cophenetic Index",
      "topics": [
        "tci"
      ]
    },
    {
      "page": "tci.context",
      "title": "Contextualize Total Cophenetic Index value",
      "topics": [
        "tci.context",
        "tci.context.n"
      ]
    }
  ],
  "_readme": "https://github.com/cran/TotalCopheneticIndex/raw/HEAD/README.md",
  "_rundeps": [
    "ape",
    "bit",
    "bit64",
    "digest",
    "lattice",
    "nlme",
    "PlotTools",
    "rbibutils",
    "Rcpp",
    "Rdpack",
    "TreeTools"
  ],
  "_score": 1.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "totalcopheneticindex",
  "_universes": [
    "ms609"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-10-16T18:06:12.000Z",
      "distro": "resolute",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/bb495a32810743049e59eb274ba66f58bba1139587451fb232a1b9e43df4e923",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-10-16T18:06:10.000Z",
      "distro": "resolute",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/5d5986d0124f5d7a621e49aa654bd8fa6a83a832733ea9f5777ffcde35b7bb9b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-10-16T18:22:55.000Z",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/c6561e386bfc02addd45011ad15b096d04943e34dff46b52be3524f85d97c5b4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-10-16T18:27:45.000Z",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/4d9989baddeb894f928d9f15799295fa45feddab0fd2ff1598400ad12a1fbe45",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.1",
      "date": "2026-10-16T18:06:04.000Z",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/ecf05e1650b293189e26e46325242f89f675681f1d1510c5317751e27ebbbde7",
      "status": "success",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-16T18:05:47.000Z",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/c849fadd727da72c0573462c2db60437e2f9fb73d3b85cc94635c92eca0e2119",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-16T18:05:46.000Z",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/43bafd8b29470977a77be947e7452bc08580b6393da25e1e4ff2b0e972a46050",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-10-16T18:05:41.000Z",
      "commit": "68c2204bebece633add09823bb311b18f76e696f",
      "fileid": "https://r2.ropensci.org/97777edf4c6c6d02a1e8c6e06219c53acd570a602641d033f00dd5ceab87d449",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/ms609/actions/runs/38944225149"
    }
  ]
}