Changes in version 2.2.0 (2026-03-25)                  

Performance

  - TipInstability() operates on the lower triangle of distance matrices
    only, halving the work for row statistics (rowMads, rowVars,
    rowMedians).

  - New batch C function LOG_GRAPH_GEODESIC_MULTI computes log-geodesic
    distances for all trees in a single .Call(), reusing one interim
    buffer and returning lower-triangle entries directly.

  - Cache-friendly extraction loop in graph_geodesic.c (stride-1 access
    instead of stride-all_nodes).

  - Auto-enable OpenMP parallelism in Rfast operations (rowMads,
    rowVars) when the distance matrix exceeds 1 000 rows.

  - Use Rfast::rowMedians() in place of matrixStats::rowMedians().

  - RogueTaxa() now calls .PrepareTrees() once and passes .prepared =
    TRUE to QuickRogue() / Roguehalla(), avoiding redundant tree
    preparation.

  - QuickRogue() precomputes information upper bounds for all iterations
    rather than recomputing each step.

                 Changes in version 2.1.7 (2025-07-01)                  

  - Improve tip instability calculation in identical tree sets (#29).

  - Improve variable protection.

                 Changes in version 2.1.6 (2023-11-29)                  

  - Legend annotations in documentation.
  - Disable parallel evaluation by default in TipInstability(), adding
    parallel parameter to allow user to override.
  - Use format string in REprintf().

                 Changes in version 2.1.5 (2023-03-20)                  

  - Call C functions using symbols, not strings.

                 Changes in version 2.1.4 (2023-01-16)                  

  - C2X compliant function prototypes.

  - Remove unused sprintf() calls.

                 Changes in version 2.1.3 (2022-09-26)                  

  - ColByStability() gains pal argument to allow specification of custom
    palettes.

                 Changes in version 2.1.2 (2022-08-16)                  

  - Faster rogue detection when edge lengths provided, per report by Joe
    Keating.

  - Don't list neverDrop in QuickRogue(fullSeq = TRUE).

                 Changes in version 2.1.1 (2022-07-20)                  

  - Handle ColByStability(trees = NULL).

                 Changes in version 2.1.0 (2022-01-13)                  

  - Early termination of QuickRogue() when no further improvement
    possible.

  - Cophenetic() renamed to the more accurate GraphGeodesic().

  - Calculate information content of consensus trees with p > 0.5 (#15).

  - Improve support for multiPhylo objects.

  - New vignette detailing rogue detection with Bayesian tree samples.

                 Changes in version 2.0.0 (2021-09-13)                  

  - Information theoretic rogue detection (per Smith, 2022).

                 Changes in version 1.0.0 (2021-07-01)                  

  - R interface to RogueNaRok.